RECENT PUBLICATIONS

Bae, H.S., E. Morrison, J. Chanton, and A. Ogram. Distribution and expression of archaeal nifH links the nitrogen cycle to methane production in the Florida Everglades. Submitted.

Henson, W., L. Huang, A. Ogram, and W. Graham. Nitrate Transformation Mechanisms and Rates in an Unconfined Eogenetic Karst Aquifer across a Redox Gradient. J. Geophys. Res. Biogeochem. In press.

Morrison, E., L. Lagos, A. Al-Agely, H. Glaab, W. Johnson, M. Jorquera, and A. Ogram. 2017. Mycorrhizal inoculation increases genes associated with nitrification and improved nutrient retention in soil. Biol Fertil Soils 53:275–279.  http://dx.doi.org/10.1007/s00374-017-1176-2

Kim, H., A. Ogram, and H.S. Bae. 2017. Nitrification, Anammox and Denitrification along a Nutrient Gradient in the Florida Everglades. Wetlands 37:391-399. http://dx.doi.org/doi:10.1007/s13157-016-0857-1

Kim, H., H.S. Bae, K.R. Reddy, and A. Ogram. 2016. Distributions, abundances and activities of microbes associated with the nitrogen cycle in riparian and stream sediments of a river tributary. Water Res. 106:51-61. http://dx.doi.org/10.1016/j.watres.2016.09.048

Pathak, A., Ashvini Chauhan, Jochen Blom, Karl J. Indest, Carina M. Jung, Paul Stothard, Gopal Bera, Stefan J. Green, and Andrew Ogram. 2016. Comparative Genomics and Metabolomics Reveals Peculiar Characteristics of Rhodococcus opacus strain M213 Particularly for Naphthalene Degradation. PLOS One, http://dx.doi.org/10.1371/journal.pone.0161032

Banik, C., W. Harris, A. Ogram, V. Nair. 2016. Carbon, iron, and aluminum responses to controlled water table fluctuations in sandy soil material. J. Soil. Sediments. http://dx.doi.org/10.1007/s11368-016-1444-z

Jorquera, M.A., F. Maruyama, A. Ogram, O. Navarrete, L. Lagos, N. Inostroza, J. Acuña, J. Rilling, M. de La Luz Mora. 2016. Rhizobacterial community structures associated with native plants grown in Chilean extreme environments. Microbial Ecology, http://dx.doi.org/10.1007/s00248-016-0813-x

Lorena M. Lagos, Jacquelinne J. Acuña, Fumito Maruyama, Andrew Ogram, María de la Luz Mora and Milko A. Jorquera. 2016. Effect of phosphorus addition on total and alkaline phosphomonoesterase-harboring bacterial populations in ryegrass rhizosphere microsites. Biol. Fert. Soils 52: 1007. https://doi.org/10.1007/s00374-016-1137-1

Morrison, E., S. Newman, H.S. Bae, Z. He, J. Zhou, K.R. Reddy, and A. Ogram. 2016. Microbial genetic and enzymatic responses to an anthropogenic phosphorus gradient within a subtropical peatland. Geoderma 268:119-127. http://dx.doi.org/10.1016/j.geoderma.2016.01.008

Bae, H-S., M. Elizabeth Holmes, Jeffrey P. Chanton, K. Ramesh Reddy, A. Ogram. 2015. Distribution, Activities, and Interactions of Methanogens and Sulfate Reducing Prokaryotes in the Florida Everglades. Appl. Environ. Microbiol., 81:7431-7442. http://dx.doi.org/10.1128/AEM.01583-15 

Lagos, L., F. Maruyama, P. Nannipieri, M. Luz Mora, A. Ogram, and M.A. Jorquera. 2015. Current overview on the study of bacteria in the rhizosphere by modern molecular techniques: a mini‒review, Journal of Soil Science and Plant Nutrition, 15: 504-523. http://dx.doi.org/10.4067/S0718-95162015005000042

Weidow, C., H.S. Bae, A. Chauhan, and A. Ogram. 2015. Diversity and distribution of actinobacterial aromatic ring oxygenase genes across contrasting soil properties. Microbial Ecology, 69:676-683. http://dx.doi.org/10.1007/s00248-014-0501-7

Holmes, B.E., J. Chanton, M. Tfaily, and A. Ogram. 2015. CO2 and CH4 isotope compositions and production pathways in a tropical peatland. Global Biogeochemical Cycles, 29:1–18.  http://dx.doi.org/10.1002/2014GB004951

Bae, H.S., F.E. Dierberg, and A. Ogram. 2014. Syntrophs Dominate Sequences Associated with the Mercury Methylation-Related Gene hgcA in the Water Conservation Areas of the Florida Everglades. Appl. Env. Microbiol. 80(20):6517-6526. http://dx.doi.org/10.1128/AEM.01666-14

Gohil, H., J. Thomas, and A. Ogram. 2014. Stimulation of anaerobic biodegradation of DDT and its metabolites in a muck soil: laboratory microcosm and mesocosm studies. Biodegradation 5:633-642. http://dx.doi.org/10.1007/s10532-014-9687-0

Holmes, B.E., J. Chanton, H.S. Bae, and A. Ogram. 2013. Effect of nutrient enrichment on δ13CH4, and the methane production pathway in the Florida Everglades. J. Geophys. Res. Biogeosci. 188:1-11. http://dx.doi.org/10.1002/jgrg.20122

Zeleke, J., Shui-Long Lu, Jian-Gong Wang, Jing-Xin Huang, Bo Li, Andrew Ogram, and Zhe-Xue Quan.2013. Methyl coenzyme M reductase A (mcrA) gene-based investigation of methanogens in the mudflat sediments of Yangtze River estuary, China. Microbial Ecology 66: 257-267. http://dx.doi.org/10.1007/s00248-012-0155-2

Chauhan, A., A. Pathak, and A. Ogram. 2012. Composition of Methane-Oxidizing Bacterial Communities as a Function of Nutrient Loading in the Florida Everglades. Microbial Ecol. 64:750-759. http://dx.doi.org/10.1007/s00248-012-0058-2

Pathak, A., S. Greene, A. Ogram, and A. Chauhan. 2013. Draft Genome Sequence of Rhodococcus opacus strain M213 Shows a Diverse Catabolic Potential. genomeA, http://dx.doi.org/doi:10.1128/genomeA.00144-12

Inglett, K.S., H.S. Bae, H.C. Aldrich, K. Hatfield,  and A.V. Ogram. 2011. Clostridium chromireducens, sp. nov., isolated from Cr(VI)-contaminated soil. Int. J. Syst. Evol. Microbiol. 61: 2626–2631. http://dx.doi.org/10.1099/ijs.0.024554-0

Ogram, A., A. Chauhan, K. Inglett, K. Jayachandran, and S. Newman. 2011. The role of microbial ecology in Everglades restoration. CRC Crit. Rev. Environ. Sci. 41, Sup. 1: 289-308.

 

RECENT BOOK CHAPTERS

Gottleib, A., J. Entry, A. Ogram, and K. Jayachandran. 2015. Importance of Microbiology to the Everglades Ecosystem. In: Microbiology of the Everglades Ecosystem, CRC Press, Orlando, FL. J. Entry, A. Gottlieb, K. Jayachandran, and A. Ogram, eds. pp 1-8.

Weidow, C., and A. Ogram. 2015. The microbial ecology of mercury methylation and demethylation in the Florida Everglades. In: Microbiology of the Everglades Ecosystem, CRC Press, Orlando, FL. J. Entry, A. Gottlieb, K. Jayachandran, and A. Ogram, eds. pp. 375-385.

Chauhan, A., A. Pathak, and A. Ogram. 2015. Ecological perspectives on the associations of syntrophic bacteria, methanogens, and methanotrophs in Florida Everglades WCA- 2A soils. In: Microbiology of the Everglades Ecosystem, CRC Press, Orlando, FL. J. Entry, A. Gottlieb, K. Jayachandran, and A. Ogram, eds. pp. 389-412.

Ogram, A., J. Entry, A. Gottlieb, K.R. Reddy, and K. Jayachandran. 2015. Closing thoughts on the role of microbial ecology in management and monitoring of the greater everglades ecosystem. In: Microbiology of the Everglades Ecosystem, CRC Press, Orlando, FL. J. Entry, A. Gottlieb, K. Jayachandran, and A. Ogram, eds. pp. 445- 454.

Bae, H.S., and A. Ogram. Molecular Ecology of Wetlands. 2013. Methods in Wetland Biogeochemistry, American Society for Agronomy, Madison, WI. R. DeLaune, ed.

Inglett, K.S., A.V. Ogram, and K.R. Reddy. 2013. Ammonium Oxidation in Wetland soils. Methods in Wetland Biogeochemistry, American Society for Agronomy, Madison, WI. R. DeLaune, ed.

 

BOOKS EDITED:

 Entry, J., A. Gottleb, K. Jayachandran, and A. Ogram, eds. 2015. Microbiology of the Everglades Ecosystem. CRC Press.