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Cornejo, C. and Wilkie, A.C. (2010). Greenhouse gas emissions and biogas potential from livestock in Ecuador. Energy for Sustainable Development, 14(4):256-266.

Davis, J.A., Farrah, S.R. and Wilkie, A.C.(2006). Selective growth of Staphylococcus aureus from flushed dairy manure wastewater using acriflavine-supplemented mannitol salt agar. Letters in Applied Microbiology, 42(6):606-611.

Davis, J.A., Farrah, S.R. and Wilkie, A.C. (2006). Adsorption of viruses to soil: impact of anaerobic treatment. Water Science and Technology, 54(3):161-167.

Edmundson, S.J and Wilkie, A.C. (2013). Landfill leachate - a water and nutrient resource for algae-based biofuels. Environmental Technology, 34(13-14):1849-1857.

Evans, J.M. and Wilkie, A.C. (2010). Life cycle assessment of nutrient remediation and bioenergy production potential from the harvest of hydrilla (Hydrilla verticillata). Journal of Environmental Management, 91(12):2626-2631.

Evans, J.M., Wilkie, A.C., Burkhardt, J. (2008). Adaptive management of nonnative species: moving beyond the "either-or" through experimental pluralism. Journal of Agricultural and Environmental Ethics, 21(6):521-539.

Evans, J.M., Wilkie, A.C., Burkhardt, J. (2009). Beneath the straw: in defense of participatory adaptive management. Journal of Agricultural and Environmental Ethics, 22(2):169-180.

Evans, J.M., Wilkie, A.C., Burkhardt, J. and Haynes, R.P. (2007). Rethinking exotic plants: using citizen observations in a restoration proposal for Kings Bay, Florida. Ecological Restoration, 25(3):199-210.

Fallahi, P., Mussoline, W.A., Athmanathan, A., Trupia, S. and Wilkie, A.C (2016). Potential value-added products from industrial sweetpotato syrup processing. Industrial Biotechnology, 12(6):343-349.

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Graunke, R.E. and Wilkie, A.C. (2014). Examining the mechanisms of short-term solubilization of ground food waste for high-rate anaerobic digestion. International Biodeterioration & Biodegradation, 86:323-333.

Harris, W.G., Wilkie, A.C., Cao, X. and Sirengo, R. (2008). Bench-scale recovery of phosphorus from flushed dairy manure wastewater. Bioresource Technology, 99(8):3036-3043.

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Mulkey, S., Alavalapati, J., Hodges, A., Wilkie, A.C. and Grunwald, S. (2008). Opportunities for Greenhouse Gas Reduction through Forestry and Agriculture in Florida. University of Florida, School of Natural Resources and Environment, Gainesville, Florida. 70p.

Mussoline, W.A., Bohac, J.R., Boman, B.J., Trupia, S. and Wilkie, A.C. (2017). Agronomic productivity, bioethanol potential and postharvest storability of an industrial sweetpotato cultivar. Industrial Crops and Products, 95:96-103.

Mussoline, W.A. and Wilkie, A.C. (2017). Feed and fuel: the dual-purpose advantage of an industrial sweetpotato. Journal of the Science of Food and Agriculture, 97(5):1567-1575.

Mussoline, W.A. and Wilkie, A.C. (2015). Anaerobic digestion potential of coproducts associated with ethanol production from sweetpotato: A review. Industrial Biotechnology, 11(2):113-126.

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Wilkie, A.C. (2005). Anaerobic digestion of dairy manure: design and process considerations. In: Dairy Manure Management: Treatment, Handling, and Community Relations. NRAES-176, p.301-312. Natural Resource, Agriculture, and Engineering Service, Cornell University, Ithaca, New York.

Wilkie, A.C. (2006). The Other Bioenergy Solution: The case for converting organics to biogas. Resource: Engineering & Technology for a Sustainable World, 13(8):11-12.

Wilkie, A.C. (2007). Glycerol and Its Uses. Presented at: Biodiesel Production Workshop, Orange County Public Schools, Westside Tech, Winter Park, Florida. 2 June 2007.

Wilkie, A.C. (2007). Biogas and Biofuel Synergies. Presented at: 2007 Farm to Fuel Summit, St. Petersburg, Florida. 19 July 2007.

Wilkie, A.C. (2008). Opportunities for reducing greenhouse gas emissions through livestock waste management in Florida. In: Opportunities for Greenhouse Gas Reduction through Forestry and Agriculture in Florida. p.33-38. Mulkey, S., Alavalapati, J., Hodges, A., Wilkie, A.C. and Grunwald, S. University of Florida, School of Natural Resources and Environment, Gainesville, Florida.

Wilkie, A.C. (2008). Biomethane from biomass, biowaste and biofuels. In: Bioenergy. p.195-205. J.D. Wall, C.S. Harwood and A. Demain (eds,). American Society for Microbiology Press, Washington, DC.

Wilkie, A.C. (2009). Local Bioprospecting for Oleaginous Algae. Presented at: National Algae Association Mid-South Chapter Workshop, Orlando, Florida. 12 June 2009.

Wilkie, A.C. and Evans, J.M. (2010). Aquatic plants: an opportunity feedstock in the age of bioenergy. Biofuels, 1(2):311-321.

Wilkie, A.C. and Mulbry, W.W. (2002). Recovery of diary manure nutrients by benthic freshwater algae. Bioresource Technology, 84(1):81-91.

Wilkie, A.C., Castro, H.F., Cubinski, K.R., Owens, J.M. and Yan, S.C. (2004). Fixed-film anaerobic digestion of flushed dairy manure after primary treatment: wastewater production and characterisation. Biosystems Engineering, 89(4):457–471.

Wilkie, A.C., Edmundson, S.J. and Duncan, J.G. (2011). Indigenous algae for local bioresource production: Phycoprospecting. Energy for Sustainable Development, 15(4):365-371.

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Wilkie, A.C., Graunke, R.E. and Cornejo, C. (2015). Food waste auditing at three Florida schools. Sustainability, 7(2):1370-1387.

Wilkie, A.C., Riedesel, K.J. and Owens, J.M. (2000). Stillage characterization and anaerobic treatment of ethanol stillage from conventional and cellulosic feedstocks. Biomass and Bioenergy, 19(2):63-102.

Wilkie, A.C., Smith, P.H. and Bordeaux, F.M. (2004). An economical bioreactor for evaluating biogas potential of particulate biomass. Bioresource Technology, 92(1):103-109.